SBC logo Authors: Andrea Krings, Amine Heddad, Markus Brameier and Bob MacCallum, Stockholm Bioinformatics Center, Stockholm University, Sweden.

NucPred - predictions for eukaryotic proteomes

Species:  

Note: All filters/tests are combined with AND unless otherwise stated
Show only the proteins with links to database(s):


( combination )
Annotation filters (can be slow! - Perl regexps allowed: e.g. nucleus|nucleolus)
UniProt ID (e.g. "PK3B_")
UniProt description (e.g. "kinase")
UniProt subcellular location
AND
UniProt GO component
AND
AND the
AND the
Only show proteins where the PredictNLS prediction is:

Only show proteins where the PSORT II predicted location
Click here: to filter by NucPred score  
exclude all transmembrane proteins predicted by TMHMM
don't exclude lone N-terminal predicted transmembrane helices
(these could be signal peptides)
 export all ACs and IDs as text file
Show proteins (ordered by NucPred score ) from to   (currently 98716 matches)    
You can bookmark/save your search criteria with this link. You can also start again with default settings.
UniProt
accession		 UniProt ID UniProt description NucPred
score		 Predict-
NLS		 PSORT
II		 TMHMM
#helices		 UniProt annotation
for subcellular location		 Uniprot GO
cellular component		 OMIM PDB sequence
length
P29865
UniProt
NPD  GO		 COX2_DROSU Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 229
P67796
UniProt
NPD  GO		 COX2_DROTO Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 229
P00409
UniProt
NPD  GO		 COX2_DROYA Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 228
P14545
UniProt
NPD  GO		 COX2_LEITA Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 3 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 210
P26857
UniProt
NPD  GO		 COX2_MARPO Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 251
P05490
UniProt
NPD  GO		 COX2_OENBE Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 258
P25002
UniProt
NPD  GO		 COX2_PISOC Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 229
P29878
UniProt
NPD  GO		 COX2_SCHGR Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 227
P98023
UniProt
NPD  GO		 COX2_TRYCR Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 4 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 210
P29655
UniProt
NPD  GO		 COX2_AMICA Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - mit 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 74
P29657
UniProt
NPD  GO		 COX2_GEOSD Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - mit 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 64
P29658
UniProt
NPD  GO		 COX2_GOMVA Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - nuc 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 72
P29659
UniProt
NPD  GO		 COX2_LEPOC Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - nuc 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 72
P29656
UniProt
NPD  GO		 COX2_LEPSP Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - nuc 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 72
P29661
UniProt
NPD  GO		 COX2_POLSX Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - nuc 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 48
O03893
UniProt
NPD  GO		 COX2_RHEAM Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - end 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 199
P29662
UniProt
NPD  GO		 COX2_SCAPL Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Fragment) 0.00 - nuc 1 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 64
P20387
UniProt
NPD  GO		 COX2_KLULA Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 247
P43376
UniProt
NPD  GO		 COX2_KLUTH Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 251
P48871
UniProt
NPD  GO		 COX2_PICCA Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 247
P47918
UniProt
NPD  GO		 COX2_WILMR Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 247
P06029
UniProt
NPD  GO		 COX2_WILSA Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 247
Q9B6D5
UniProt
NPD  GO		 COX2_YARLI Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 242
P00410
UniProt
NPD  GO		 COX2_YEAST Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) 0.00 - end 2 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein respiratory chain complex IV (sensu Eukaryota) [IPI] 251
Q37374
UniProt
NPD  GO		 COX3_ACACA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 329
O47691
UniProt
NPD  GO		 COX3_AEPME Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
P80439
UniProt
NPD  GO		 COX3_ALLMA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 274
P34842
UniProt
NPD  GO		 COX3_ANOGA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 262
P33508
UniProt
NPD  GO		 COX3_ANOQU Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 262
O47702
UniProt
NPD  GO		 COX3_ANTCE Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 261
O47701
UniProt
NPD  GO		 COX3_ANTMR Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 261
P92514
UniProt
NPD  GO		 COX3_ARATH Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 265
Q36309
UniProt
NPD  GO		 COX3_ARTSF Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 257
P24879
UniProt
NPD  GO		 COX3_ASCSU Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 255
P00415
UniProt
NPD  GO		 COX3_BOVIN Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein 2OCC 261
Q9MIY4
UniProt
NPD  GO		 COX3_BRARE Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
P24891
UniProt
NPD  GO		 COX3_CAEEL Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * mitochondrial inner membrane [ISS] 255
Q9ZZ61
UniProt
NPD  GO		 COX3_CANFA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 5 * Mitochondrion; mitochondrial inner membrane; multi-pass membrane protein (By similarity) 261
Q96133
UniProt
NPD  GO		 COX3_CARAU Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
O47693
UniProt
NPD  GO		 COX3_CEPNA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 261
O03201
UniProt
NPD  GO		 COX3_CERSI Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
P48872
UniProt
NPD  GO		 COX3_CHOCR Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 272
P34198
UniProt
NPD  GO		 COX3_CROLA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
P48873
UniProt
NPD  GO		 COX3_CYACA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 270
P15952
UniProt
NPD  GO		 COX3_CYPCA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261
O47694
UniProt
NPD  GO		 COX3_DAMLU Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 261
O79552
UniProt
NPD  GO		 COX3_DINSE Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 261
P00417
UniProt
NPD  GO		 COX3_DROME Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 262
P00418
UniProt
NPD  GO		 COX3_DROYA Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 6 * 262
Q8W9N0
UniProt
NPD  GO		 COX3_DUGDU Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) 0.00 - end 7 * 261

You are viewing entries 94101 to 94150 of 98716. You can see more proteins by changing the limits in the form at the top of this page, or click here for the next page of proteins .



If you find NucPred useful, please cite this paper:
NucPred - Predicting Nuclear Localization of Proteins. Brameier M, Krings A, Maccallum RM. Bioinformatics, 2007. PubMed id: 17332022
The authors also look forward to your comments and suggestions.

What does the NucPred score mean?

You have to decide on a NucPred score threshold. Sequences which score greater than or equal to this threshold are predicted to spend some time in the nucleus. Higher thresholds yield fewer predicted nuclear proteins, but these predictions are more accurate (you can have higher confidence in them). The table below gives more details of the performance of NucPred estimated using the sequences it was trained on (by cross-validation). Another benchmark is available in the Bioinformatics 2007 paper.

NucPred score threshold Specificity Sensitivity
see above fraction of proteins predicted to be nuclear that actually are nuclear fraction of true nuclear proteins that are predicted (coverage)
0.10 0.45 0.88
0.20 0.52 0.83
0.30 0.57 0.77
0.40 0.63 0.69
0.50 0.70 0.62
0.60 0.71 0.53
0.70 0.81 0.44
0.80 0.84 0.32
0.90 0.88 0.21
1.00 1.00 0.02

Sequences which score >= 0.8 with NucPred and which are predicted by PredictNLS to contain an NLS have been shown to be 93% correct with a coverage of 16%. (PredictNLS by itself is 87% correct with 26% coverage on the same data.)

Go back to the NucPred Home Page.