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Introduction
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Computational Analysis of Protein
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Outline of thesis
Contents
Antibody-antigen interactions: contact analysis and binding site topography
Subsections
Introduction
Methods and Data
Antibody structures and sequences
Accessibility and burial
Canonical loops and structural alignment
Surface analysis
Results
Contact Analysis
Antigen contacts - CDR definitions
Contacts and antigen type
CDR backbone conformation -- contacts in three-dimensional space
Antibody surface topography
Antibody-antigen interface
Whole combining site
Uncomplexed antibodies and `induced fit' movements
Predicting antigen contacts
Discussion
Copyright Bob MacCallum - DISCLAIMER: this was written in 1997 and may contain out-of-date information.
