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List of Tables

1. Complexed antibody structures
2. Uncomplexed antibody structures
3. CDR definitions
4. Combining site shape classes for the complexed antibody structures
5. Combining site shape classes for the uncomplexed antibody structures
6. Shape classes of complexed and uncomplexed antibodies
7. Secondary structural class prediction accuracies
8. Secondary Structural Content Prediction using a modified version of SSCP[Eisenhaber et al., 1996a,Eisenhaber et al., 1996b]
9. Mainly-$\beta$ architecture prediction
10. $\chi _t^2$ analysis of amino acid usage between the three main classes
11. $\chi _t^2$ analysis of (i,i+3) duplet usage between the three main classes
12. $\chi _t^2$ analysis of (i,i+3) duplet usage between the mainly alpha and mixed alpha-beta classes
13. $\chi _t^2$ analysis of (i,i+3) duplet usage between the ribbon and non-ribbon beta architectures
14. $\chi _t^2$ analysis of (i,i+3) duplet usage between the sandwich, barrel and distorted sandwich architectures
15. Correct top-ranking fold recognition results using Smith Waterman local alignments
16. Four hydrophobicity related scales
17. Summary of fold recognition using alignment of raw sequence derived information.
18. Summary of fold recognition results using alignments of hydrophobicity (Kyte and Doolittle)
19. Summary of fold recognition results using alignments of hydrophobicity (Bull and Breese)
20. Summary of fold recognition results using alignments of hydrophobic moment direction
21. Summary of fold recognition results using alignments of conserved hydrophobicity score
22. Summary of fold recognition results using alignments of combined raw hydrophobicity and DSC secondary structure prediction probabilities
23. Similar folds with different CATH topologies are recognised.
24. CATH architectures
25. Descriptions for selected mainly-$\alpha$ CATH topologies
26. Descriptions for selected mainly-$\beta$ CATH topologies
27. Descriptions for selected mixed-$\alpha \beta$ CATH topologies